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Bayesian Generalized Linear Regression in R (BGLRR)
Software to simplify the selection of input files and parameters to perform bayesian generalized linear regression using R
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Francisco Rodríguez, Paulino Pérez, Gustavo de los Campos, Gregorio Alvarado, Ángela Pacheco, José Crossa, Juan Burgueño
Spatial Multi-Environment Trial Analysis with R (Spatial META-R)
Software to simplify the selection of input files and parameters to perform spatial multi-environment trial analysis using R and ASReml
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Francisco Rodríguez, Gregorio Alvarado, Ángela Pacheco, José Crossa, Juan Burgueño
Multi Environment Trail Analysis with R (META-R)
META-R is a set of R programs that perform statistical analyses to calculate BLUEs, BLUPs, and genetic correlations for breeding trials.
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Gregorio Alvarado, Marco López, Mateo Vargas, Ángela Pacheco, Francisco Rodríguez, Juan Burgueño, José Crossa
Flapjack
Multi-platform tool for interactive visualization of high-throughput genotype data, allowing for rapid navigation and comparisons between lines, markers and chromosomes and visualization around QTL features and characterization data.
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Information & Computational Sciences, The James Hutton Institute
CurlyWhirly
Multi-platform interactive multi-dimensional data visualization tool optimized for use of categorical data with PCO, PCA and MDS outputs.
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Information & Computational Sciences, The James Hutton Institute
Helium
Multi-platform pedigree visualization tool with phenotype display.
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Paul Shaw, Jessie Kennedy, Martin Graham, James Hutton Institute, Edinburgh University