Molecular breeding software tools

Breeding informatics

Software to visualize and analyse data for molecular breeding applications.

Entries in collection

Cloud hosted tools from EiB, HTPG and GOBII on the Galaxy Project service.
CGIAR Excellence in Breeding Platform
R programs for biodiversity analysis of molecular data.
Ángela Pacheco, Gregorio Alvarado, Francisco Rodríguez, Juan Burgueño
Software to simplify the selection of input files and parameters to perform bayesian generalized linear regression using R
Francisco Rodríguez, Paulino Pérez, Gustavo de los Campos, Gregorio Alvarado, Ángela Pacheco, José Crossa, Juan Burgueño
Software to simplify the selection of input files and parameters to perform spatial multi-environment trial analysis using R and ASReml
Francisco Rodríguez, Gregorio Alvarado, Ángela Pacheco, José Crossa, Juan Burgueño
META-R is a set of R programs that perform statistical analyses to calculate BLUEs, BLUPs, and genetic correlations for breeding trials.
Gregorio Alvarado, Marco López, Mateo Vargas, Ángela Pacheco, Francisco Rodríguez, Juan Burgueño, José Crossa
Multi-platform tool for interactive visualization of high-throughput genotype data, allowing for rapid navigation and comparisons between lines, markers and chromosomes and visualization around QTL features and characterization data.
Information & Computational Sciences, The James Hutton Institute
Multi-platform pedigree visualization tool with phenotype display.
Paul Shaw, Jessie Kennedy, Martin Graham, James Hutton Institute, Edinburgh University